Can Ergen
Can Ergen
Please split into two PRs. One for the warmup changes and one for the inference changes. This makes it easier to follow changes.
I’m sorry for the long time it took us to get back. We expect users to preprocess data using: https://scvelo.readthedocs.io/en/stable/scvelo.pp.moments.html as highlighted in our tutorial. This function returns dense matrices....
Quick check looks good. Can you explain, why we don't inherit from MULTIVI and MULTIVAE?
Hi, the errors you are referring to are issues about MPS Apple hardware. We have seen the issue you are facing in multiVI in newer scvi-tools version. The main reason...
We are on it. I have one solution (gradient clipping) that solves similar problems in totalVI (AdversarialTrainingplan is not stable). We first need to make sure that it doesn't reduce...
Hi @bio-la, currently we enable an adversarial classifier even if only a single batch is present in the dataset. This is a bug. We will have a fix soonish. To...
Fixed in #2914 and will be released with scvi-tools 1.2.
@ori-kron-wis Close this?
Hey @rcannood, My older workaround with backed=FALSE is not working anymore. Even with backed=FALSE it doesn't load the data frame correctly. I suspect it's some version mismatch so below is...
Hi, below is a function to convert old MERSCOPE data to new one (at least to open things in SpatialData. I have no new version in hand so it might...