cgpBigWig
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BigWig manpulation tools using libBigWig and htslib
During the installation, I've got this error message. In file included from bam_access.c:36:0: bam_access.h:39:20: fatal error: bigWig.h: No such file or directory #include "bigWig.h" ^ compilation terminated. make: *** [bam_access.o]...
The `-a --overlap` option doesn't have a leading newline so gets jammed on the end of filter-include
compared to covtobed and mosdepth, bam2bw does not seem to support strand-separation and insert-coverage.
Added threadpools to `bam2bw`,`bam2bwbases` and `bam2bedgraph`
Not sure it will have a large impact on performance here but worth a look
Dear Davir, When I run the compilation (cgpBigWig) everything runs, but in the end I get an error bellow, any suggestion: gcc -O3 -DVERSION='"0.4.4"' -g -I/usr/local/ICGC/include -I/usr/local/cgpBigWig-0.4.4/install_tmp/htslib/ -rdynamic -Wall ./bam2bwbases.c...
Need to update Makefile to install binaries to the perfix location (suffixed with `/bin`). Makefile should also check that location for HTSLIB when not provided.