ccdhmodel
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cancerDHC
CRDC-H model in LinkML, developed by the Center for Cancer Data Harmonization (CCDH)
This rdflib plugin is deprecated for, as of the 2021-09-17 release of rdflib 6.0.1, JSON-LD handing has been integrated. All functionality in this package has been removed, as of release...
**Is your feature request related to a problem? Please describe.** While CCDH entities are grouped into various categories (e.g. "administrative entity", "clinical entity"), this information is not present in the...
See e.g. https://github.com/cancerDHC/ccdhmodel/runs/4072762994?check_suite_focus=true, where installing dependencies took 2m28s and tox tests take 1m31s.
**Describe the solution you'd like** Add the "CRDCH Model Entities and Relationships diagram" from the HioH slides for Oct 28, 2021 to the CRDCH Model. **How important is this feature?**...
We currently use a slightly simplified version of the [Git Flow branching model](https://nvie.com/posts/a-successful-git-branching-model/) -- we create feature branches to develop new features with tests, and then merge them into the...
I had a few ideas to make the `ccdhmodel` repository more maintainable and readable. - [x] #137 - [x] Decide if we want to name the artifacts folder `crdch_model` or...
In addition to the baked-in search, which appears to not be full-text search, it would probably be good to have a single page that includes all of the attribute mappings...
Every class has a number of "Referenced by class" section in the Markdown documentation that indicates other classes that that refer to this class. For example, [Specimen](https://cancerdhc.github.io/ccdhmodel/v1.0.1/Specimen/#referenced-by-class) indicates that Diagnosis...
Currently an instance of `Coding` looks like this: ```yaml collection_site: # type = BodySite site: # type = CodeableConcept coding: # type = Coding - code: C12468 label: Lung system:...
This PR updates LinkML to the last version, which includes some fixes for OWL generation in additional to other bugs. Ideally, we should add a test to the `tests/` directory...