ccdhmodel
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cancerDHC
CRDC-H model in LinkML, developed by the Center for Cancer Data Harmonization (CCDH)
Given the move to CodeableConcepts as the way in which the CRDCH model handles codes, we should put some thought into how enumerations and recommended codes are handled in the...
For example, there are mapping statements using skos predicates for several terms, but not cancer stage observation types. See also cancerDHC/example-data#31
See the bottom of section C.3.a and E.2.a in the recent RFP cloned from https://github.com/cancerDHC/example-data/issues/35
In preparation for PR #127, this PR updates LinkML to the latest version and regenerates the model. So far I've found that the Terminology Service appears to have changed (21b2b635e038f91866ebc9ba0caaa30bb8be3d2a),...
The Python Data Classes are currently generated in a single file at `python/ccdhmodel.py`. This cannot be accessed directly via pip. I believe that the new LinkML model template currently being...
One of the artifacts we generate (by using the LinkML [csvgen](https://github.com/linkml/linkml/blob/main/linkml/generators/csvgen.py)) is [a CSV file listing the entities in the model](https://github.com/cancerDHC/ccdhmodel/blob/main/crdch_model/csv/crdch_model.csv). It would be helpful if we could improve this...
Current work on the GDC- and PDC-to-CRDCH transformation code in the Example Data repo suggests that many transformations are relatively straightforward, such as one field renamed as another field. Some...
The DST analyzed data dictionaries from a range of projects and produced a report that asserted a set of candidate minimum metadata elements. A majority of these minimum metadata elements...
refactor [`MAINTAINERS.md`](https://github.com/cancerDHC/ccdhmodel/blob/main/MAINTAINERS.md) based on https://github.com/cancerDHC/ccdhmodel/pull/75#pullrequestreview-733344067
`setup.cfg` says > author = Mark A. Miller author_email = [email protected] That should be changed to @gaurav or somebody else besides me