Camille Scott

Thanks @eburgueno! I suspect that on occasion an individual program in the pipeline might be failing due to resource starvation just before the scheduler has the chance to kill the...

Curious! Can you give me your dammit version info (`dammit --version`), a little snippet of the input FASTA (`head INPUT.fa`), and a bit of your log file (`tail -n 200...

I haven't managed to reproduce this, and unfortunately the logs haven't been very useful. Could you give me as much of the transcriptome fasta as you can reasonably send, so...

That'd be helpful! :) On Fri, Oct 28, 2016 at 8:52 AM, Matt MacManes [email protected] wrote: > Camille. I am having this bug, too. Can help send you a fasta...

Pleased to report that after a serendipitous sit-down with @butterflyology, we were able to reproduce this error on his data and I now have everything I need to fix it!...

The issue is fixed in the 1.0 beta branch; I'll put up some instructions for upgrading shortly.

Ahh, I hadn't realized TransDecoder had made it into backports. It also looks like the EC2 14.04 images don't have backports enabled by default (and neither did my system), which...

The documentation does indeed say they are enabled by default, but on the images supplied by Amazon for a "bare" 14.04 they are commented out. I believe the same held...

Now that I like. I'll get it added into the install instructions. On Thu, Dec 10, 2015 at 2:39 PM, Michael R. Crusoe wrote: > > Here's a oneliner >...

I believe the answer was that she is running version 0.3, and that this is fixed in the 1.0 release candidate. There are instructions [here](http://angus.readthedocs.io/en/2017/dammit_annotation.html) for getting that (I need...