calmasri

UnboundLocalError in generate_chain_data_cache.py

2

Hi, I sucessfully generated the mmcif cache, but ran into an issue while trying to generate the chain data cache: ``` python3 scripts/generate_chain_data_cache.py /data/openfold/data/pdb_mmcif/mmcif_files_new/ chain_data_cache.json --cluster_file clusters-by-entity-40.txt --no_workers 16 10%|███████▋...

Alignment taking too long

4

I was trying to generate new alignments using the `precompute_alignments_mmseqs.py ` script: ``` python3 scripts/precompute_alignments_mmseqs.py /fasta_dir/query_seqs.fasta \ data/mmseqs_dbs \ uniref30_2103_db \ /fasta_dir \ /data/MMseqs2/build/bin/mmseqs \ --hhsearch_binary_path /usr/bin/hhsearch \ --env_db colabfold_envdb_202108_db...