scnym
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calico
Semi-supervised adversarial neural networks for classification of single cell transcriptomics data
Some cell profiles contain a large majority of reads mapping to a single gene (e.g. the `Rn45s` locus for low quality cells). These cells are usually filtered out during quality...
The scNym package (and tutorials) are broken as it attempts to install leidenalg==0.8.0 from cache and fails. Please see the below error message. Please fix the scNym package requirements. Collecting...
Attempting to install yields the error ``` error: subprocess-exited-with-error × Preparing metadata (pyproject.toml) did not run successfully. │ exit code: 1 ╰─> [1 lines of output] error in leidenalg setup...
Bumps [requests](https://github.com/psf/requests) from 2.26.0 to 2.31.0. Release notes Sourced from requests's releases. v2.31.0 2.31.0 (2023-05-22) Security Versions of Requests between v2.3.0 and v2.30.0 are vulnerable to potential forwarding of Proxy-Authorization...
![dependabot[bot] avatar](https://avatars.githubusercontent.com/in/29110?v=4 "dependabot[bot] avatar"){kind=avatar}
Bumps [numpy](https://github.com/numpy/numpy) from 1.21.0 to 1.22.0. Release notes Sourced from numpy's releases. v1.22.0 NumPy 1.22.0 Release Notes NumPy 1.22.0 is a big release featuring the work of 153 contributors spread...
Bumps [torch](https://github.com/pytorch/pytorch) from 1.4.0 to 1.13.1. Release notes Sourced from torch's releases. PyTorch 1.13.1 Release, small bug fix release This release is meant to fix the following issues (regressions /...
Bumps [scipy](https://github.com/scipy/scipy) from 1.4.1 to 1.10.0. Release notes Sourced from scipy's releases. SciPy 1.10.0 Release Notes SciPy 1.10.0 is the culmination of 6 months of hard work. It contains many...
Bumps [urllib3](https://github.com/urllib3/urllib3) from 1.26.6 to 1.26.18. Release notes Sourced from urllib3's releases. 1.26.18 Made body stripped from HTTP requests changing the request method to GET after HTTP 303 "See Other"...
when I run the example of scNym Cell Type Classification with Cell Atlas References. i got somthing wrong, i think there must be something wrong with the model? 
Hi, Thank you for developing `scNym`, I have been using it a lot for label transfer tasks and it is great!. So far, my workflow has worked flawlessly until I...
