caitiecollins

icon company Imperial College London icon location London, U.K.

Results 4 comments of caitiecollins

Could not find .aligned.fa/.vcf in 73

Dear @tseemann, I am unfortunately running into a similar error. I'm trying to run snippy-multi on a set of assembled genomes. I did this with no issues when using my...

Error in La.svd(x, nu, nv) : error code 1 from Lapack routine 'dgesdd'

Hey Conrad, I'm afraid I'm not entirely sure what's causing this problem for you. You're correct that the warning message should be there, as you have single-individual clusters and xval...

cross validation is slow

Unfortunately, this sounds like you’re running into an error rather than a slow process. I wouldn’t expect a single run of xvalDapc on a dataset of your size to take...

Error in treeWAS(snps = snps, phen = phen, tree = tree, n.subs = NULL, : Some elements of tree$tip.label are absent from names(phen).

Hi, Could you please confirm by running this line on your tree and phen: `all(tree$tip.label %in% names(phen))` Does it return `TRUE`? If you are able to share your tree and...