Abraham

N50 and L50

1

just one question, for assembly-stats example (in your main page), in N50=1687656 and n=5, n correspond to L50 ??? Thanks $ assembly-stats Pf3D7_v3.fasta stats for Pf3D7_v3.fasta sum = 23328019, n...

avoid warning if don't give a match against the data base

1

I’m trying to find genes obtained from genome and compare with a Virulent Factors database (VFDB), so, not all genes from the genome will give a match against the database;...

Calculate the average of the relative abundance at Family level

4

Hi, I would like to know if my approach to calculate the average of the relative abundance of any taxon is correct !!! If I want to know if, to...

Hi, I made a theme based on available theme, PlasticCodeWrap, I made changes in color, I just want to change one thing, the window used to open a files in...

how to import the blastkoala results to MetQy

1

Hi, I have some bacteria genomes (Vibrio vulnificus strains), it was assembled using Spades, and then I use the generated contigs to generate a file.faa using prokka, an then I...

Hi, I just want to know how to increase the width in the scale bar using theme_tree2, I'm using the default parameters for theme_tree2. to generate the tree I use...

Calculate the direction of data obtained from gff file

1

How could I plot a group of genes in the same directions using gggenes and ggplot2 ? I have a data obtained from a .gff file, it was generated with...

Calculate coordinates from gff file with genes in different directions

1

Hi, I’m using the read_feats function to import gff files generated with prokka, and then use the coordinates from some genes to generate a plot, nevertheless some of those genes...