datahub-study-curation-tools

datahub-study-curation-tools copied to clipboard

sbabyanusha

This PR introduces two DAGs: `genie_data_dag.py`, and `import_genie_dag.py`. - Scripts for the genie_data_dag.py are contained in the `scripts/` directory. Also included in this PR is a Dockerfile for the Airflow...

callachennault

Z-score normalization to normal samples

3

I'm exploring the TCGA Pan-Cancer dataset which includes 32 studies. What samples are used as background when I select expression with normalization to normal samples? Are there adjacent normal samples...

antass

JurassikLizard

Hello, We are using cBioPortal for our data management in a research project on pancreatic cancer at the University Hospital in Göttingen. I just stumbled over this repo and am...

nilsbeyer

sbabyanusha

* Issue 1: Samples marked WXS/WGS in the gene panel matrix file but do not exist in the sequenced case list -> TMB = 0.0 (should be NA) * Issue...

Rima-Waleed

# **Problem:** For the iAtlas to cBioportal project, we need to use python3 to run our processing pipeline for the clinical and maf datasets. We use some of the scripts...

rxu17