cbioportal

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g2s web server certificate about to expire

1

The g2s web server https/ssl certificate will expire Tuesday, August 23, 2022 at 3:08:23 PM Eastern Daylight Time A renewal of the certificate is needed before that time. If we...

sheridancbio

Try to select a custom list of samples in TCGA Pancan cohort study view: ``` gbm_tcga_pan_can_atlas_2018:TCGA-02-2483-01 ucec_tcga_pan_can_atlas_2018:TCGA-5B-A90C-01 lusc_tcga_pan_can_atlas_2018:TCGA-66-2765-01 brca_tcga_pan_can_atlas_2018:TCGA-A8-A08A-01 brca_tcga_pan_can_atlas_2018:TCGA-AN-A0AL-01 brca_tcga_pan_can_atlas_2018:TCGA-AO-A03V-01 brca_tcga_pan_can_atlas_2018:TCGA-AQ-A04L-01 brca_tcga_pan_can_atlas_2018:TCGA-BH-A203-01 thca_tcga_pan_can_atlas_2018:TCGA-BJ-A0Z0-01 stad_tcga_pan_can_atlas_2018:TCGA-BR-8080-01 stad_tcga_pan_can_atlas_2018:TCGA-CG-4469-01 brca_tcga_pan_can_atlas_2018:TCGA-D8-A13Z-01 lihc_tcga_pan_can_atlas_2018:TCGA-DD-AA3A-01 lihc_tcga_pan_can_atlas_2018:TCGA-ED-A7PX-01 chol_tcga_pan_can_atlas_2018:TCGA-W5-AA2Q-01...

inodb

Fix stable id typo in docs on SV data

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This is the id name that I see here: https://www.cbioportal.org/api/studies/msk_impact_2017/molecular-profiles?direction=ASC&pageNumber=0&pageSize=10000000&projection=SUMMARY

inodb

Post Release 5.0 Follow Ups

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In MSK-IMPACT Cohort: - [ ] Archer results are currently shown as a separate record on the [Patient view](https://cbioportal.mskcc.org/patient?studyId=mskimpact&caseId=P-0037751). Should we leverage the RNA_SUPPORT column and show that column in...

inodb

Mutations endpoint no longer needs to do join to check for fusions (this should improve performance)

1

inodb

Clinical Data Bin Counts endpoint followup

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- [ ] Do not query database with sample identifiers, filter in memory instead - [ ] Add a test for dynamic bin calculation

onursumer

genie v12 fusion profile percent is back to 100%

1

I'm pretty sure we've had this issue before and that it will be fixed properly when we go live with SV, but I'm also pretty sure in the past we've...

tmazor

patient page should indicate when no genomic data exists

1

I'm not sure if there's an example in the public portal of a sample that only has clinical data, but we have some in our internal portal. For these patients,...

tmazor

Would be nice if one could share the URL to a specific pathways viewer (Ndex vs pathwaymapper). E.g. this always goes to pathwaymapper: https://www.cbioportal.org/results/pathways?case_set_id=all&gene_list=PIK3CA&cancer_study_list=5c8a7d55e4b046111fee2296

inodb

htan patient timeline comments

6

I'm not sure if these are data or UI, but I noticed a few things looking at the HTAN patient timeline: 1) Labtest/IHC tooltips don't include the gene:  2)...

tmazor