c1imbe2

ctb, I see from your Quickstart that you're also running CompareM on macOS. I'm running on macOS High Sierra 10.13.3, and have been able to install comparem and run wf_aai...

Yes, same problem using the sourmash dataset. Terminal gives the following output, regardless if I change the 'sed' and 'sort' commands or leave them as originally written: ``sed: 1: "/var/folders/3j/gh2jtvw...

I uninstalled using `pip uninstall comparem` and re-installed using `pip install -e comparem`. Same result. I can delete similarity_search.py and comparem still runs fine.

@ctb Thanks -- this worked for me. After installing in developer mode, the trick was editing the simliarity_search.py found in the the python2.7/comparem directory, not the directory containing cloned files....