Brad Langhorst

hmm - I assumed this was about the gzip format... seems not to be the case (sorry about the red herring) I think the problem is with the additional columns...

Do you want this to work with mulitple columns (like [methyldackel](https://github.com/dpryan79/MethylDackel))?

Unfortunately cut -f 1-4 won't work for me - I need to make a new calculation using methyated and unmethylated counts (columns 5 and 6) I'm working around the issue...

seems to work for me now - thanks!

@tuicemen thanks for your reply. I think 1.1-stable.527 must have been prefilled - sorry.! I just checked ... the actual version number is v1.3-stable.5 (which is the latest I think)....

Seems like a motley crew of at mentions... I wonder how @rjg2186 selected this surprising group. I agree that this is very likely not related to bwa. If you want...

i think this can be closed... silva is now fully open.

@arq5x I'm seeing segfaults on a conda build of 2.30 on linux x64 I've attached some example files... is there something strange about these? [test_bedgraphs.tgz](https://github.com/arq5x/bedtools/files/10760488/test_bedgraphs.tgz) these look sorted to me....

yeah - probably segfault is not the best UI ;)

ah - i guess i have not seen a core dump outside of that situation... A segfault would certainly be a bug - sounds like this is just a missing...