Bijan Varjavand

Currently the path issues can be reproduced by running the `create_image_layer` code from either `brainlit.utils.upload_skeleton` or `brainlit.utils.upload_to_neuroglancer`.

When I run the code on my computer I get no errors. Can you `print(dir, dir_segments)` right before the NeuroglancerSession line, just to verify the value of those variables?

Well, you've misspelled these lines ``` dir = "s3://mouse-light-viz/precomputed_volume/brain1" dir_segments = "s3://mouse-light-viz/precomputed_volume/brain1_segments" ``` when they should be ``` dir = "s3://mouse-light-viz/precomputed_volumes/brain1" dir_segments = "s3://mouse-light-viz/precomputed_volumes/brain1_segments" ``` Still, it is surprising to...

@alishakodibagkar I think it's worth building the Vaa3D plugin, I imagine that platform has other algorithms to be tested as well? As you go along, please add a markdown file...

we want to modify lines like these https://github.com/neurodata/brainlit/blob/develop/brainlit/preprocessing/features/base.py#L96 note how it uses a `segments_url` kwarg instead of the correct `url_segments` kwarg. We want to update methods in the following files...

This allows for docs to build them, and for simpler diffs and git contrib

Currently: Every time someone pushes a jupyter notebook with output, documentation simply loads the notebooks instead of rerunning them. A solution is to use nbstripout to remove notebook output when...

I see. The code you are looking for is code by [cloud-volume](https://github.com/seung-lab/cloud-volume/blob/master/cloudvolume/skeleton.py#L908-L972), which is called by [utils/swc](https://github.com/neurodata/brainlit/blob/develop/brainlit/utils/upload.py#L349-L374) which is called by [utils/upload](https://github.com/neurodata/brainlit/blob/develop/brainlit/utils/upload.py#L349-L405). `parent=-1` implies that a node is the root...

alternatively or additionally, use the `get_data_ranges` method [here]( https://github.com/neurodata/brainlit/blob/develop/brainlit/utils/upload.py#L194) to enumerate the ranges for each mip and confirm that a file exists with the name of each possible range. May...

It seems to make the most sense for there to be a `utils/validation.py` file which executes methods to validate already-uploaded CloudVolumePrecomputed volumes. It would be able to be tested alongside...