Ellyn Butler
Ellyn Butler
I am running the example code in section 4.7.3 [here](https://nilearn.github.io/plotting/index.html), and the brain is not showing up in the browser, but the markers are, and when I download the image...
### Summary I am post-processing fMRI data that has already been run through fMRIPrep. I am trying to use `fsl.ExtractROI()`, but every time I run it, a segmentation fault occurs,...
### What would you like to see added in fMRIPrep? I've noticed that when I run fmriprep with the `--longitudinal` flag, it does not include the individual session structural output...
I have a super simple question. I have built a docker image for which I would like to install this library. I am able to install nipy (`RUN pip install...
### Summary I ran heudiconv with the following call: ``` singularity run --writable-tmpfs --cleanenv --containall \ -B /projects/b1108/studies/mwmh/data/raw/neuroimaging:/base \ -B /projects/b1108/studies/mwmh/scripts/curation/heuristic.py:/base/heuristic.py \ /home/erb9722/heudiconv_0.9.0.sif \ -d /base/dicoms/sub-{subject}/*/*/*/*/*.dcm \ -o /base/bids/ \...
### Summary I am running heudiconv v 0.9.0 using the corresponding docker image. After ~10 hours running, heudiconv happened upon a dicom that resulted in an [invalid tag error](https://docs.openrem.org/en/0.8.0/trouble_dictionary.html). The...
It would be helpful to expand `load_confounds` to include scrubbing based on [filtered FD (fFD)](https://www.sciencedirect.com/science/article/pii/S1053811920303529). This method has the benefit of excluding fewer volumes while simultaneously reducing motion biases in...
Hi! I just attended the NiLearn office hours to learn more about how censoring works with `signal.clean`. Through inspecting the [source code](https://github.com/nilearn/nilearn/blob/9aa503f5/nilearn/signal.py#L460), it was determined that the volumes flagged with...
### Description of issue I followed the [transformations](https://netneurolab.github.io/neuromaps/user_guide/transformations.html) wiki to get my data from freesurfer's fsaverage5 space into fsLR32k space, but I am having some trouble exporting the resulting gifti....