Orion Buske

Results 16 issues of Orion Buske

The term suggestion is broken because of the lack of a configurable terminology server. When a terminology server is not present, terms should just be added as plaintext, rather than...

bug

The DatePicker and Suggest widgets should be replaced by a more modern suggestion widget such as [selectize.js](https://github.com/selectize/selectize.js)

enhancement

Originally, there was an ethnicity field per individual, but this doesn't work well with the way that pedigrees are usually drawn. Instead, their should be one or more maternal and...

help wanted

Currently, we state that versions take the form "vX.Y" in the header, but then we have hotfix versions of the form "v1.0a", which does not conform to [semantic versioning](http://semver.org/spec/v2.0.0.html). It...

As discussed on today's call, one method for doing this is to add the contact type to `patient.contact`, with the burden on the receiving service to filter if they want...

PR submitted

PhenomeCentral collects patient-level inheritance mode as HPO terms, and variant-level inheritance as one of the following strings: - de novo germline - de novo somatic mosaicism - maternal - paternal...

Discussed and approved at the Miami meeting day 1.

enhancement
add field
Review required

As suggested by GA4GH metadata: ga4gh/schemas#234 Since the 'contact' field is within each 'patient' object, it makes it look like these are the contact details for the patient, rather than...

Review required

I think this would be helpful for visualizing the various ways the API can be used. GA4GH has done this, to nice effect: https://github.com/ga4gh/metadata-team/blob/master/example/schemas/

help wanted
documentation

Currently, each MME service implements their own pheno/genotypic scoring metric. This is great. Part of the goal of the project is to have these metrics compete and evolve. We have...

enhancement