budnikm
budnikm
I would expect that the RNA models in the latest release would handle this situation a bit better if those are false positive calls. For example, the m5C model would...
The epi2me dataset is only used for validation. We use different datasets for model training. There are several changes in the new version of the models. They have a new...
I'm not sure if we have a description publicly available. In any case, the training datasets don't contain these kinds of co-occurrences. So I agree with your concern and would...
Also could you show us how those tandem calls look in IGV? With both the old and the new models? That would be really helpful.
Thanks for that! So just to be clear: the above IGV example is m6A (salmon color) before m5C (in blue)?
Right, so it seems to me that the new model might be fixing a lot of these issues. Are there still cases where the m5C is called almost as much...
Thanks a lot! Nice to see that there are some significant improvements with the new models. So it does seem like it's most likely a m5C FP call next to...