Benjamin Skubi
Benjamin Skubi
**Is your feature request related to a problem? Please describe.** In my pipeline, I define a set of distinct experimental conditions, each with an individual number of biological replicates, and...
_Commit_: I am running Ubuntu Linux with Chrome (Version 119.0.6045.105 (Official Build) (64-bit)) on a desktop computer with 32 GB RAM, Intel Core i9-10900K processor, and PNY Quadro M2000 4GB...
The pairtools library encourages use of .lz4 compression, but I get an `invalid start byte` error if I try to use .lz4-compressed .pairs as input to `cooler cload pairs`. This...
For the --max-insert-size parameter of pairtools parse2, the documentation says: > When searching for overlapping ends of left and right read (R1 and R2), this sets the minimal distance when...
I'm using pairtools restrict to label restriction fragments. When I include this step in my pipeline, I notice mounting consumption of swap memory that grows past the amount available on...
Until recently, I'd been using pairtools parse. Recently I switched to parse2. In testing my parse2-based pipeline, I started running into issues with sorting where, for example, I'd have a...
I ran `pip install higlass-manage`, which installed version 0.8.0 successfully. However `higlass-manage view *.cool` failed with a "module not found" error for higlass.client in the view.py file. Examining the source...
After pip installing bsbolt from source code in mamba, GenotypeMatrix and External are not copied to the site-packages/bsbolt folder, and bsbolt throws a module not found error for GenotypeMatrix. I...
## Bug report This is a very peculiar bug involving an apparent breakdown of scope when the same Groovy method is called by two subworkflows in parallel. The smallest example...
This is going to be a great tool to use and share. I would love to see a comment type option added for triple-quotes in Python docstring style (""" """)....