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Thanks for your prompt response. GS : Gene Significance MM: Module Membership

Hi Narges I am a newbie in Python, could you please give me more help with the self.moduleTraitCor/self.moduleTraitPvalue? I tried the codes below pyWGCNA_ASM1 = PyWGCNA.readWGCNA("ASM.p") pyWGCNA_ASM1.self. moduleTraitCor.head(5) and got...

Here is an R method (https://horvath.genetics.ucla.edu/html/CoexpressionNetwork/Rpackages/WGCNA/Tutorials/FemaleLiver-03-relateModsToExt.pdf)