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bryandmartin
Count Regression for Correlated Observations with the Beta-binomial
When I started using `differentialTest`, I was struggling a bit to extract more information beyond the p-values that are exposed on the result object. I then looked at the code...
Hi! I've been playing around with corncob and I can't figure out how to properly format the plots. The plot() function somehow stitches together all taxonomic levels from the taxonomy....
Hello! I'm trying to run a relatively simple model as follows: `ex1
After merging #125 `differentialTest` will now print every single fitted model independent of the verbosity setting which clogs up the console and will make the function much slower due to...
Hi, I'm having a problem that seems to be happening to others as well. I'm running the following model on a dataset of 100 samples, and the categorical variable that...
Hello, So we are investigating the variations in gut microbiota of great tits across a gradient of urbanization. We would like to identify the differentially abundant microbial taxa between samples ...
Hi @bryandmartin, Thanks so much for this awesome vignette. It has been super helpful to go through and familiarize myself with the package. This isn't so much of an issue...
It seems to me that running `differentialTest` is a [perfectly parallel](https://en.wikipedia.org/wiki/Embarrassingly_parallel) problem. For my current project, the time taken is too short to just start an analysis in the background,...
Extract the estimates from differentialTest without having to use a long pipe with `map`
Be able to calculate intervals for all ASVs and without having to use `plot`
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Count Regression for Correlated Observations with the Beta-binomial