Broncio Aguilar-Sanjuan

Inserting subfigures with Myst-Markdown that render in book

6

hey @broncio123 - could you open up a new issue if you've got a question? I believe this issue is targeted for displaying figures in both myst-markdown and jupyter interfaces...

Finding H-bonds and KIHs with Isambard2

1

Hi, I'm struggling to find a way with the `ampal` module to get all H-bonds (Sidechain-Sidechain, Sidechain-Mainchain, etc) and Knobs into Holes, given a PDB. With previous `isambard` versions I...

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Incorporate filters to enhance LD plots appearance

3

For the future, this can be done by defining our own filters, OR Use other filters implemented by other Python libraries for image-processing.

Modify code to store solved trajectories as an option

1

This seems a very useful feature for user-experience, to visualize how trajectories seat in phase-space alongside manifolds. By default, they shouldn't be stored, as the main objective is to compute...