brobr

I do not know anything about jellyfish, but looking at the above outputs; one looks like python-3.8 (`jellyfish.cpython-38.pyc`), while the other is python-2.7. So, if you work from within python-2...

Have you seen this tutorial? https://bioinformatics.uconn.edu/genome-size-estimation-tutorial/

It looks like very unique. Maybe your k-mer (-m) parameter is too high? Play around with that value. I did it in my case for a fungal genome of 19...

Hi Maria, it looks like something is wrong with your set-up or needs updating. It does work at my end .....  (This is on linux; rpy2-3.3.4, jupyter-notebook-6.0.3, R-4.0.1, python-3.8.3;...

I can imagine when you work with a supported organism, the gene-look up is quite nice. The idea is great. This begs the question could that functionality be linked to...

When trying out the two-cats example (on python 3.7; pandas-0.24.2) this warning pops up after running: `net.load_file('../data/rc_two_cats.txt')` > /usr/lib64/python3.7/site-packages/clustergrammer_widget/clustergrammer/load_data.py:68: FutureWarning: read_table is deprecated, use read_csv instead, passing sep='\t'. header=col_arr)

Hi, I get the same problems as described above on python 3.7 with pandas-0.24.2; notebook-kernel 5.1.1; ipywidgets 7.4.2. It only works with the downloaded two-cats example notebook. In a fresh...