Roman Briskine

Thanks for the explanation! Could you add a similar example to the vignette? I think it is general enough and it would be very useful because a lot of data...

I have the same problem. The output files are empty even when I set `-fdr 0.99 -fdrlimit 0`.

Here is what's happening. The footprints method of the Diffwel class performs a division when creating coordinates for GenomicIntervalSet object (line 74 in wellington_bootstrap.py) . return_set.append(((i[0] + i[1])/2, i[3])) This...

I have the same problem. I fixed it by removing all secondary or supplementary alignments from the bam files, e.g. `samtools view -h -F 0x800 -o filtered.bam input.bam` (or `-F...