BridgeDb
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bridgedb
The BridgeDb Library source code
See details at https://github.com/APIs-guru/openapi-directory/issues/238
This endpoint doesn't filter results by dataSource: ``` curl -d $'ENSG00000083093\tEn\n1234\tL' http://webservice.bridgedb.org/Human/xrefsBatch?dataSource=S ``` It should just return results for `S` (Uniprot-TrEMBL), but it currently returns all results: ``` ENSG00000083093 Ensembl...
In http://identifiers.org/hgnc/ we see Identifier pattern `^((HGNC|hgnc):)?\d{1,5}$` which is (somewhat) reflected in the HGNC Accession number entry https://github.com/bridgedb/BridgeDb/blob/master/org.bridgedb.rdf/resources/IdentifiersOrgDataSource.ttl#L2762 ``` turtle bridgeDB:hasRegexPattern "^(HGNC:)?\\d{1,5}$" ; ``` This means that identifiers http://identifiers.org/hgnc/47710 and...
With a public version of the IMS web services developed in Open PHACTS.
Would anyone find it useful for BridgeDb to support the [NCBI Taxonomy](https://www.ncbi.nlm.nih.gov/taxonomy) for identifying organisms? Some time ago, I mapped each of our supported organisms to its Taxonomy IRI, but...
@egonw and I were discussing preferred IRIs for Xref properties in BridgeDb, and we'd welcome input from other community members on this. This webservice endpoint http://webservice.bridgedb.org/Human/attributes/En/ENSG00000139618 returns: ``` Description BRCA2,...
HDT is a new binary file-based RDF "store" that can be queried and combined with an index provides the equivalent of a Derby file, but the fully semantic web based....
- [x] examples - [ ] org.bridgedb.file.orthoxml - [ ] org.bridgedb.webservice.biomart - [ ] org.bridgedb.tools.batchmapper