Brian Nadon
Brian Nadon
Just want to chime in since my issue #3356 was mentioned: After changing jobs and coming back to VG and graphs after a several months and a few VG updates,...
Can you expand a bit on what exactly "embedded paths" are? I've seen it mentioned and I'm not sure what that is. Sorry if that's available somewhere in the wiki,...
As an aside, any hints as to what these edge tables actually represent and how they're calculated would be greatly appreciated. Are they simply raw counts of how many reads...
Hate to be a bother but the issue has come up again for me and i'm curious if anyone could offer any insight into how the packed coverages are calculated...
They are high coverage because the sequencing is a result of targeted hybrid-capture sequencing of an HLA locus. We expect very high coverage for this data. I'll ask about sharing...
confirming I had this same problem and a "#" in my sample names was the culprit, thanks for your answer @gconcepcion . Perhaps a warning in the README telling people...
That's good to know. However, I was getting this issue as far back as last week too, and I pulled the latest version of vg around then too. Do I...
Would like to add I'm getting this same exact issue as well, and notably also with the provided example data (e.g. snp1kg-BRCA1). Sequencetubemaps and vg were both pulled and installed...
No particular position @Nheyer. Just upon first loading up the map.