Brian Abernathy

**1. What were you trying to do?** View distance index construction progress using `vg index --progress`. **2. What did you want to happen?** Have progress updates written to stdout/stderr. **3....

output giraffe alignment when --hard-hit-cap exceeded for all minimizers

5

**1. What were you trying to do?** Compare reads aligned with bwa and giraffe, where the bwa reference sequence is also a path found in the graph. **2. What did...

PathGraphBuilder::write(): Size limit exceeded, construction aborted

2

I am trying to index a gfa constructed from 3 closely-related melon sequences (to use with `vg map`) using `vg autoindex`. The gfa is ~2G, not particularly large or complex....

unspecified edge overlaps error

4

I'm running `GraphAligner bioconda 1.0.16-` with a gfa that contains "*" edge overlaps. GraphAligner is failing with the following error. `Error in the graph: Unspecified edge overlaps (*) are not...