brian2

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Conda environment installation instructions for doing brian2 development

2

It might be nice to have instructions somewhere for how to set up a conda environment for doing brian2 development in, i.e. where you will not be running ``python setup.py...

thesamovar

[WIP] Use an epsilon independent of dt when comparing times

16

I'm not super happy with this fix, but I did not see any other obvious solution. As a bit of context: in Brian, we are making our life hard by...

mstimberg

After switching to pytests (#1127), we can potentially improve our test suite in various ways, to make it more useful during development: * [ ] Use [`pytest.mark.parametrize`](https://docs.pytest.org/en/latest/parametrize.html#pytest-mark-parametrize-parametrizing-test-functions) to parametrize tests...

mstimberg

Allow comment-only lines in abstract code

4

I think we don't currently allow this right? It would be good for readability I think.

thesamovar

Port Brian1 correlated inputs

4

In Brian 1 there were functions to generate correlated spike trains: http://brian.readthedocs.io/en/1.4.3/inputs.html#correlated-inputs with an example here: http://brian.readthedocs.io/en/1.4.3/examples-misc_correlated_inputs.html It shouldn't be too difficult to port.

romainbrette

Compartment condensation

1

Hi all, I'm not sure whether this is the way to bring this up here, but I drafted an implementation of compartment condensation for extended morphologies. Realistic morphologies e.g. based...

chbehrens

Tracking documentation coverage?

5

After creating #1080, I was thinking about how we could catch issues like this (i.e. a feature that is not documented anywhere). For our test suite, we have a notion...

thesamovar

Report function in cpp_standalone mode

1

Hi there, I'm trying to switch my code to cpp_standalone. I had a report function implemented in Runtime code generation, here is the code : ``` ############################################################################################################################################################ ############################################################################################################################################################ ## Logging...

ulyssek

different synaptical behaviour with/without `prefs.codegen.target = 'numpy'`

2

Hello! I wanted to understand how the synapses work and which data is available when, thus I build the following debug dumping code: This code does nothing else then dumping...

flomlo

Implementation of Markov channel models

3

Hi all, I would like to implement Markov models for ion channels in Brian2 (as already discussed with @mstimberg). It seems possible without any changes to the core of Brian2....

jonathanoesterle