brgew

Test and refine the label transfer code.

Add projection facilities including model saving and loading. We need still to make models for the align_cds() function and the preprocess_cds() LSI function. We are not including models for tSNE.

Add annoy and HNSW nearest neighbor indices including saving and loading.

BPCells::linear_operator()

2

Hi Ben, Is it OK to use the `BPCells::linear_operator()` function in production software? Or do you recommend against it? If it is OK to use it, does it help with...

matrix verification

2

Hi Ben, I am thinking about verifying a BPCells directory-based matrix. I would like to verify that the `BPCells::write_matrix_dir()` function succeeded and I would like to verify that a matrix...

Hi, Is it possible to write SAM or BAM files? If not, is it possible to implement this in the near future? I appreciate your consideration. Ever grateful, Brent

matrix with no cells

1

Hi Ben, I think that this is a marginal problem. Anyway, we can have matrices in which all cells are filtered out; that is, all cells have less than 100...