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smoove paste error
I'd like to know if anyone has encountered such a problem when using the smoove paste command? (after population calling,about 4000 samples)I allocate the same resources, but it seems to be successful sometimes and error sometimes. I don't know what the problem is, the smoove or my server. Looking forward to your reply, thank you! example 1 #error [smoove] 2023/10/06 01:07:29 starting with version 0.2.8 [smoove] 2023/10/06 01:07:29 squaring 3647 files to DUP.smoove.square.vcf.gz [smoove] 2023/10/06 01:13:31 all files had 23207 variants 2023/10/06 04:22:15 signal: killed example 2 #worked successfully [smoove] 2023/10/06 04:22:16 starting with version 0.2.8 [smoove] 2023/10/06 04:22:16 squaring 3154 files to DUP.smoove.square.vcf.gz [smoove] 2023/10/06 04:27:22 all files had 23207 variants [smoove] 2023/10/06 07:00:49 wrote squared file to DUP.smoove.square.vcf.gz example 3 #another error #actually the index file has no error and No such errors were reported in other previous runs. [smoove] 2023/10/06 01:07:09 starting with version 0.2.8 [smoove] 2023/10/06 01:07:09 squaring 3647 files to INV.smoove.square.vcf.gz [smoove] 2023/10/06 01:10:39 Failed to open /INVs/XH4042/XH4042-smoove.genotyped.vcf.gz: could not load index 2023/10/06 01:10:42 exit status 255 [smoove] 2023/10/06 01:10:42 starting with version 0.2.8 [smoove] 2023/10/06 01:10:42 squaring 3154 files to INV.smoove.square.vcf.gz [smoove] 2023/10/06 01:14:21 Failed to open /INVs/CN5780/CN5780-smoove.genotyped.vcf.gz: could not load index 2023/10/06 01:14:24 exit status 255