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Published 20 hours ago • verified publisher icon brentp

lumpy_filter: command not found

Open fengpku opened this issue 3 years ago • 1 comments

Hi I installed smoove by conda on linux, but when running it, there are some errors

[smoove]: ([E]lumpy-filter) 2021/03/08 15:28:07 /bin/bash: lumpy_filter: command not found

Do you know how to fix it?

fengpku avatar Mar 08 '21 20:03 fengpku

hi, if you run smoove with no arguments, you should see a list of tools and an indication of whether they are found on your path. All of those will need to be present to run smoove. If you do not have lumpy_filter then lumpy has not been installed correctly.

brentp avatar Mar 09 '21 05:03 brentp