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Published 20 hours ago • verified publisher icon brentp

panic if outdir contains "+"

Open plmsuper8 opened this issue 3 years ago • 1 comments

Hello, I met a minor bug: soomve call may translate "+" in into +, which leads to a panic. It happens in soomve call --outdir , but no problem with BAMS path. The problematic command can be found in *lumpy-cmd.sh Thanks a lot

CMD: smoove call --outdir /path/with+/ ... /path/with+/1.bam panic: exit status 255

plmsuper8 avatar Dec 22 '20 03:12 plmsuper8

Hi, I would for now, avoid paths with "+", you can probably symlink if need. I'll gladly accept a pull request to fix this.

brentp avatar Dec 22 '20 04:12 brentp