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Published 20 hours ago • verified publisher icon brentp

slivar tsv and VEP canonical

Open Madelinehazel opened this issue 2 years ago • 1 comments

Hi @brentp,

Is it possible for slivar to allow VEP's canonical flag in the CSQ field when exporting to tsv? E.g. gene_impact_transcript_Gene_CANONICAL_EXON_HGVSc_HGVSp_Protein_position_Consequence_PolyPhen_SIFT

Thanks, Madeline

Madelinehazel avatar Nov 08 '21 20:11 Madelinehazel

Hi, you can get other CSQ columns with --csq-column argument to slivar tsv

brentp avatar Nov 08 '21 20:11 brentp