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Avg depth for multiple BAMs with BED input

Open Kiran936 opened this issue 3 years ago • 1 comments

Hi How to Calculate Avg depth for multiple BAMs with BED input

Kiran936 avatar Dec 14 '21 04:12 Kiran936

Hi, mosdepth operates on one bam/cram at a time. If you want average across samples, you'd have to do that your self from the per-base or the regions.bed.gz

brentp avatar Dec 14 '21 05:12 brentp