List of Chromosomes

[DarioS]

Could --chrom accept a comma separated list of values, like --read-groups already does?

[pontushojer]

I second this, it would be a very useful addition.

Also I think that being able to reads from a list of chromosomes/contigs would be useful. Specifying chromosomes by comma separation would be quite messy for more than a few chromosomes.

[brentp]

I would accept a PR add this, but probably won't add it myself. You can run mosdepth on a 30X genome in < 10 minutes so extracting individual chromosomes is less of a need. You could also do this by making a bed file with an interval that spans each chromosome you are interested in.