goleft icon indicating copy to clipboard operation
goleft copied to clipboard

Published 20 hours ago • verified publisher icon brentp

indexcov support for csi indexes

Open mcshane opened this issue 6 years ago • 2 comments

Hi @brentp. Any chance to add support for CSI indexes for indexcov? Generating lots of assemblies, and many have larger scaffolds, which require the CSI rather than BAI...

mcshane avatar Feb 08 '19 15:02 mcshane

Looks like that should be do-able. It will be a couple of weeks before I can get to it.

It will have to convert anything that's not already 16KB bins to that resolution but the biogo/hts API is similar for BAI and CSI, so it might not take much.

brentp avatar Feb 08 '19 16:02 brentp

Cool. Thanks!

mcshane avatar Feb 08 '19 16:02 mcshane