fishers_exact_test
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brentp
Fishers Exact Test for Python (Cython)
Hi I'm wondering if you've ever run into this issue that your implementation deviates from R and scipy for extreme ORs with low p-values? Example is below. I did notice...
Is there a tool that allows you to obtain gene IDs from a list of annotated transcriptome ?
Hi, First of all I wanted to thank you for this amazing package, this implementation of Fisher's exact test is insanely fast! I'm developing a package and I would like...
Hello everyone, I can not move in my work being weak in statistics I hope to find help once again on github !!! I have a set of two COGs...
``` Traceback (most recent call last): File "Stats.py", line 16, in fisher_test try: pval = fisher.pvalue(x11, x12, x21, x22).right_tail File "src/cfisher.pyx", line 86, in cfisher.pvalue OverflowError: value too large to...
Hi, The scipy implementation returns the odds ratio, any chance you may be able to provide it? https://docs.scipy.org/doc/scipy/reference/generated/scipy.stats.fisher_exact.html Thanks! D.
Python: fisher.pvalue(94, 48, 3577, 16988) Pvalue(left_tail=1, right_tail=2.069e-37, two_tail=1.101e-10) R: > r = fisher.test(matrix(c(94, 48, 3577, 16988), nrow = 2)) > r$p.value > [1] 2.069356e-37 the reason is the very high...
Similar issue: https://github.com/brentp/fishers_exact_test/issues/1 To fix this issue i can see that epsilon's value was set to 1e-40. https://github.com/brentp/fishers_exact_test/commit/784b16c13f93dc7f9501e75709bfcec28e981e81#diff-9d732e6f8ea16a3f2d3c25496385d6feL139 But in current release I can see epsilon value is 1e-6. Because...
Cuz numpy is dropping support around 1.17. For py2 compatibility one needs `pip instal l numpy==1.16.5` ``` File "/tmp/easy_install-Z7zXAC/numpy-1.17.4/setup.py", line 31, in RuntimeError: Python version >= 3.5 required. ```
