setting DUPHOLD_SAMPLE_NAME doesn't work

[am8265]

Hello @brentp,

Thank you for this tool!

I had e.g. errors like this [duphold] couldn't find sample:sqcudn971184 in snps vcf which had:sqcudn971184.187147

due to bam file and snps VCF file differing in sample names(in bams the names are truncated). Previously, have solved this issue with renaming the header of the snp VCF(removing the .187147). However this time tried to set up like this export DUPHOLD_SAMPLE_NAME='sqcudn971184' or just this DUPHOLD_SAMPLE_NAME='sqcudn971184' which doesn't work.

I would appreciate any leads on this.

[brentp]

just use:

export DUPHOLD_SAMPLE_NAME=sqcudn971184.187147

[am8265]

just use:

export DUPHOLD_SAMPLE_NAME=sqcudn971184.187147

just tried it, still doesn't work