Brent Pedersen

Hmm. Are you sure that libhts.so is still there? What does `ls $LD_LIBRARY_PATH/libhts.so` show?

Hi Monkol. I am happy to have interest in the tool. That would be great if you could provide a binary. You can follow the recipe in mosdepth, that bioconda...

Blah. Thanks for persisting. It should not be this hard. Thankfully, bioconda makes a lot of this stuff less of a PITA. I'll also see if I can get a...

hi, I had recently restructured hts to be more modular. I have just updated indelope master to reflect that change. thanks for reporting.

Hi John, thanks for this. I haven't been happy with the performance (accuracy-wise) of the pipeline I have now. I think I will add octopus. I'll get the basics going...

I have created a pipeline for octopus. It currently doesn't do much more than follow the instructions for population calling, but it does, for example, find trios and run trio...

wow. thanks for sharing this. I didn't know about `+split-vep` plugin. I am curious what's stopping you from using slivar as the final step. It doesn't populate strings by default,...

hi, you can use `seqcover save-transcripts` from the head node or elsewhere, call `seqcover report --transcripts-file $tr.json ...`

I updated to a version 0.5-0 that attempts to explicitly include the fastsearch.h header. I built this a long time ago and haven't done much with lua and especially not...

ping @jdonaldson