Jessen Bredeson

Merqury over-estimates genome completeness

3

Hey, Great tool, it's very useful and easy to use! I ran Merqury on an Illumina-based assembly I had and obtained a completeness estimate much larger than I expected, given...

__gen_read routine does not reverse insertions on reverse strand

3

I'm not a C programmer, but (perl is similar enough and) I produced a 'git diff' of the changes I made to fix the issue. Perhaps there is a better...

hk_parse_seg error

9

Hi!, I'm attempting to convert a .pairs file to a .3gd file but am recieving the following error: ``` hickit: io.c:81: hk_parse_seg: Assertion `c != 0' failed. ./infer-3dgc.sh: line 5:...

merfin doesnt respect -threads option

4

Hi! FYI, I'm running `merfin -dump -threads 8` at the moment, and it is currently running the `meryl count` step on the genome sequence fasta with 16 threads. Is this...

CrossMap v0.3.3 and v0.3.4 outputting float gff coordinates

4

Hi CrossMap Devs, What a nifty tool! I'm writing to report that `CrossMap gff` is writing feature start and end coordinates in floating point values instead of integers in the...

sonLib cannot find pthread_create

1

Hey @benedictpaten, I'm trying to compile cactus with PhyloP support and am encountering the following error: ``` $ make Building dependency sonLib Building dependency pinchesAndCacti Building dependency matchingAndOrdering Building dependency...

Hi @pmelsted, Thank you for this cool tool! I was experimenting with the `Bifrost query` command line tool and noticed that if I specify a single sequence in the input...