brainrender-napari

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[Feature] Investigate leveraging `napari-vedo-bridge`

4

This issue is to track how we could make use of [`napari-vedo-bridge`](https://github.com/jo-mueller/napari-vedo-bridge), and to give some more context to [this conversation on X](https://x.com/jm_mightypirate/status/1815334303288508657). To state the current situation: - We...

adamltyson

Use UI dialogs from `brainglobe-utils`

5

Rather than using Qt directly, using [these](https://github.com/brainglobe/brainglobe-utils/blob/main/brainglobe_utils/qtpy/dialog.py) would make the code very slightly easier to maintain. By default it will also make the dialogs match napari.

adamltyson

[Feature] support visualising meshes in just one hemisphere.

2

**Is your feature request related to a problem? Please describe.** Showing the mesh in just one hemisphere is a common use case. **Describe the solution you'd like** Being able to...

alessandrofelder

[BUG] Tests fail in CI - investigation needed

1

**Describe the bug** A clear and concise description of what the bug is. **To Reproduce** Please enter full details of how to reproduce this bug. **Expected behaviour** A clear and...

alessandrofelder

Comprehensive typehints towards solving issue #86 and light refactor

5

## Description **What is this PR** - [ ] Bug fix - [ ] Addition of a new feature - [x] Other **Why is this PR needed?** it makes code...

conradRz

[BUG] check-manifest fails on Mac OS

8

**Describe the bug** A clear and concise description of what the bug is. When running `pre-commit run -a`, I encounter the following error. ``` check-manifest...........................................................Failed - hook id: check-manifest -...

kiratoyoshihara

[Feature] Add a new column that shows the data size of the atlas in the Atlas Manager."

4

**Is your feature request related to a problem? Please describe.** A clear and concise description of what the problem is. Ex. I'm always frustrated when [...] When downloading atlases, I...

kiratoyoshihara

**To Reproduce** Try to download an atlas, while there is a non-empty active query. If the query is empty this works fine. **Expected behaviour** The atlas is downloaded **Additional context**...

alessandrofelder

[BUG] Structures don't load for atlases in user configured brainglobe_dir path

3

**Describe the bug** I have set a different path for my brainglobe_dir variable in the config file for brainglobe_atlasapi than the default. When I load the brainrender widget in napari,...

pderdeyn

**Is your feature request related to a problem? Please describe.** Currently, atlas annotations display as a labels layer with the default colourmap, but some atlases contain a predefined colour for...

alessandrofelder