brainfo
brainfo
Hi, I'm a Bianca user and I cannot get into the nfcore UPPMAX slack channel. How could I get into it? Just in case I will encounter any problems. Thanks!
> Hi, > > If you have a filtered pairs file the easiest is to use bed2D_to_BAMhic, look here https://3dgenomes.github.io/TADbit/tutorial/tutorial_6-Filtering_mapped_reads.html#save-to-bam > > The bed file you need to produce with...
> Hi, > I have one sample. It might have several cell types which we donot know. How can I generate a pseudotime from a mix of cell population that...
Hi, with the example code on Dash, both mode inline and external work, but mode jupyterlab doesnt work. I used JupyterDash class: ```{py} from jupyter_dash import JupyterDash import dash_core_components as...
With one single batch test data from 10x (We loaded 18,000 nuclei): 1. ``` Running Scrublet ###no log transform### filtered out 12596 genes that are detected in less than 3...
same issue here with both 2.9.7c or 2.9.7e coupled with R 4.1.3 or 4.2.2, STAR 2.7.10a, samtools 1.15.1. also read the commits history, but find any clues like which commit...
Hi, I feel like it's also good to have a hypothesis driven layout, showing the specific sender-ligand -- receptor-recepient pairs, with for example senders on one sphere and recepients on...
> Hi @brainfo, thanks for the suggestion. I'm still working on refactoring the algorithmic side of liana, but once I'm done with that. I will refactor the functions and extend...