Basile

I noticed that the latest fmriprep LTS release https://github.com/nipreps/fmriprep/releases/tag/20.2.8 has not been added here yet. Maybe some of the logic here is not meant to get new older versions: https://github.com/ReproNim/containers/blob/720fd49ea6b81729465593e0809c6018a445628d/scripts/create_singularities#L81

pre-commit fixes on all files to avoid other PR to contain unrelated changes

1

Ran `pre-commit run --all-files` to avoid any pre-commit induced changes in other PRs, making their review more difficult.

BUG: puzzling erroneous version reporting in docker

4

### What happened? I noticed that the MRIQC package in docker are all reporting a non-existent version that mismatch the version of the docker tag for the 24 line. I...

MTS example do not follow current specs

3

In https://osf.io/k4bs5/ `ds-mtsat` uses outdated/pre-BEPS `_acq-` rather thank `_flip-_mt-` which can confuse willing BIDSonauts. ;)

[PERF] tests data uses 8k inodes

2

I noticed that https://github.com/bids-standard/pybids/tree/master/bids/tests/data/ds005 does account for 8k files for each install in venvs, or for each Ci job that install pybids, which could slow things down depending on filesystem....

Are there examples of how to extract ascconv from a pydicom or dicomwrapper object? ``` wrapper= nibabel.nicom.dicomwrappers.wrapper_from_file('path/to/dicom') csa = nibabel.nicom.csareader.get_csa_header(wrapper.dcm_data, 'series') mrprot= csa['tags']['MrPhoenixProtocol']['items'][0] asc=nibabel.nicom.ascconv.parse_ascconv(mrprot, '""') # --> 207 attrs, content...

[ENH] lighter alpine multi-stage build docker image, ~65% smaller

5

*Disclaimer: I don't know enough about Neurodocker and Reproenv to know if these are critical to run heudiconv image in specific contexts or if there are any advantages compared to...

feat: rename BIDS files for multi-orientation series.

6

(rebase of https://github.com/nipy/heudiconv/pull/441 , many years later I know slightly more what I am doing.) The purpose of that PR is to rename files adding `acq-orient` when there are multiple...

### Summary This section of code should be extracted from `populate_aggregated_jsons` and `populate_aggregated_jsons` and triggered when converting bold files only (or asl too maybe). https://github.com/nipy/heudiconv/blob/86d22104bc0a6eb4fc488c0f083c52008815b1af/heudiconv/bids.py#L275-L284 problems: - it recreates template...

Might occur on anonymized dicom tags. see https://github.com/nipy/heudiconv/issues/539