bozbezbozzel

Remove --af_esp flag as it's deprecated

1

This flag stops vcf2maf from running with vep 107 (haven't tested it for earlier versions)

Question about sva correction: why does IsoformSwitchAnalyzeR tell me I have a lot of SVs but sva actually disagrees?

3

Hi, I'm following the steps in your vignette (great work by the way) for my data of about 100 NSCLC patients. With `importRdata` I keep receiving the warning though that...