Boyi Guo

Clustering on univariate data

2

Thanks for the awesome algorithm and package. I wonder if the algorithm could possibly be used to cluster based on one variable/feature. For example, if I use `d=1` in the...

Thanks for creating and maintaining the package. I'm experimenting the `SpatialExperiment::read10xVisium`to import the Visium HD data via https://www.10xgenomics.com/datasets/visium-hd-cytassist-gene-expression-libraries-of-mouse-brain-he. I noticed in this example data, specifically default Spaceranger output `square_008um_outputs.tar.gz` (unzipped...

Thanks for the nice package! I've been using `vis_grid_clus` to plot multiple samples together. I noticed the legends representing levels of `clustervar` are always turning to numbers instead of showing...

[BUG] Error during extract and reformat enrichment results when using `registration_wrapper`

3

## Describe the bug Thanks for creating and maintaining the awesome `spatialLIBD` package. Recently, I was trying to conduct spatial registration by running `registration_wrapper` function on a `SpatialExperiment` object. I...

Editorial Suggestions of Chapter 9 Quality Control

1

Link to Chapter: https://lmweber.org/OSTA-book/quality-control.html Suggestions: 1. Emphasize the column `cell_count` in the `SpatialExperiment` is a product of `VistoSeg` instead of `spaceranger count` to avoid confusion between counting the cells and...

Documentation Error

1

For the function `sparkx`, the input parameter `count_in` should be p*n matrix, instead of n*p matrix. Can you confirm?