Boyang Zhao
Boyang Zhao
It seems that toil would get stuck in a recursive loop if from the AWS s3 file structure, there is a "folder" as one of the keys (which can happen...
Hi it seems I'm keep running into space issues when trying to run jobs on AWS clusters using toil. I don't know how much is attributed to configurations on instance...
It seems that the creation of the proper nodes are not well optimized, leading to stalling of jobs for various reasons. Below are some example cases. While I mention the...
I'm following through with the [instruction](https://toil.readthedocs.io/en/3.15.0/running/cloud/amazon.html) on how to run toil on AWS, including using `toil launch-cluster` to start clusters, and `toil rsync-cluster` to sync the files onto the cluster....
It seems the rabix tool, in the workflows, when a given parameter (that is defined as required by the underlying tool) is selected as "Exposed", this parameter automatically becomes an...
Hi, with the rabix desktop, we have to manually drag out from a tool/subworkflow to port an input or output. With many ports, dragging it some can be very cumbersome,...
I noticed that the rabix composer can result in an empty prefix '' for an argument if the user in the visual editor 1) first creates an argument with some...
Hello, Can you guys provide a bit more info on what the outputs from the `msisensor-pro msi` results mean? I see there are the _prefix_, _dis, _germline, __somatic files. It...
Is there a way to set custom tag for the AWS EC2 instances run with toil-cwl-runner? I see there is the `TOIL_OWNER_TAG`, but this is only for launching clusters. The...
It seems there are some issues with starting toil if the toil docker is from a private registry, because toil in __init__.py does a check first if the image exists...