Boxiang Liu

Based on the reply from @roblanf, here is a way to add new sequences to existing alignment. > Let’s say you have a tree called tree1.tree with 96 sequences from...

Dear @hyunminkang, I am having the same issue as stated above. The software runs to the step where *.single has been generated, but reports a segmentation fault. The *.sing2 and...

@XuezheMax I should add that I have the Penn tree bank 3.0 data, but I am not sure how to convert it to the required format. Is there a straightforward...

Thank you signalsensefred. I looked into the directory, two files, **init**.py and **init**.pyc are in this directory. I didn't find data in this directory. I tried to reinstall bein_minilims using...

Hi signalsensefred, I installed the developer version and it worked :). Thanks for your help.=). By the way, the warnings as I run "htminilims data", such as this one: File...

Got it. Sorry for the late reply! Yes. I am calling sQTLs. I am going to change the line to `if (count / float(totN) >= cutoff and totN >= readcutoff)`....

PR sent.

@maegsul Thank you very much for this detailed analysis! @goldenflaw Yang, quick question. Is there a reason the old pipeline used overhang > 6 but the regtools pipeline used overhang...

Hello Cassie, Thanks for reaching out! This is a great suggestion - something I have considered before but never got the chance to implement. If this is a feature that...

Hello Tim, Thank you so much for looking for these bugs - and sorry for the significant delay on my end. For the first (incorrect coloring of lead SNP), would...