bounlu
bounlu
### Description of feature It would be nice to have the option `--skip_fastqc` just like in other pipelines e.g. [`rnaseq`](https://nf-co.re/rnaseq/3.12.0/parameters#skip_fastqc). Sometimes FastQC reports are already available from a previous analysis...
Hello, I want to remove CpG context from the analysis for MSI calculation from both tumor and normal (or baseline). What is the best way to do it?
I have compared MSI scores for the same tumor samples between: 1. its matched normal (`msi`) 2. a baseline of normals (`pro`) I had 65 tumor and 58 normal samples...
I want to create a baseline from 58 normal samples. I specified them in the config file and it runs fine with `msisensor-pro baseline` command. However, even though I specified...
There is no parameter in `degPCA` to pass `scale` to `prcomp` function, which means the data is not scaled during PCA. However, scaling the data before PCA is often suggested.
Hi, In the mapping with tophat-fusion step, I get the below error: ``` $ clear_quant -1 206_1.fq.gz -2 206_2.fq.gz -g /library/hg19.fa -i /library/hg19.fa -j /library/hg19.fa -G /library/hg19.genes.gtf -o 206 -p...
Hi, I have two sets of sequencing data for the same cell lines: 1. Total RNA-Seq (ribo-) 2. circRNA-Seq (ribo- and RNaseR+) Referring to the [CLEAR article](https://doi.org/10.1016/j.gpb.2019.11.004), it says: >...
Hi, Is this version available in anaconda yet? Are you planning to add it soon? Thanks.
### Bootstraptable version(s) affected 1.22.1 ### Description Setting `data-advanced-search="true"` does not show hidden columns (`data-visible=false`) at the beginning, which is expected. But when toggling columns to display hidden columns or...
### Bootstraptable version(s) affected 1.22.1 ### Description Setting `data-filter-control-multiple-search` to `true` does not allow to search multiple values at once separated by comma. Instead it returns nothing found.