bosmont

Hi Lasse, Thanks for your response. I tried a few different BAM files, and all got same error. So it looks like it is not specific to any particular BAM...

Hi Lasse, I have been using all default tophat2 parameters, except with "--no-coverage-search" turned on. I generated BAM files from SRR387661 with tophat2 and then run bayesembler, but got same...

Forgot to mention, I am running the above command in my linux box in Rstudio