Benedikt Obermayer

access distances in heap

3

Hi, I'm trying to use sparse distance matrix for agglomerative hierarchical clustering (using the algorithms from [`gbbs`](https://github.com/ParAlg/gbbs)). While it works reasonably well for my use case using only nearest neighbors...

Seurat v3/v4 compatibility in new release

7

Hi, is the current release (v2.0.4) not compatible with Seurat v4.4 objects? `doubletFinder(seu, PCs = 1:10, pN = 0.25, pK = 0.09, nExp = nExp_poi, reuse.pANN = FALSE, sct =...

loading python package via reticulate fails with `rmarkdown::render` whereas `Rscript` succeeds

5

Hi, I'm trying to run python packages via reticulate, but imports fail when using `rmarkdown::render("script.R")` whereas`Rscript script.R` succeeds. here's my conda env ``` mamba create -c conda-forge -n test scanpy...