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bmcage
The ODES scikit for ordinary differential and algebraic equations, an extension to scipy
I've been trying out the `dae()` solver and I was not able to find explanations of the possible kwargs for the function in the online documentation. I did find this...
I'm on Arch linux, installed Sundials 5.1.0, scikits.odes version 2.6.3. But I get: ImportError: /usr/lib/python3.10/site-packages/scikits/odes/sundials/ida.cpython-310-x86_64-linux-gnu.so: undefined symbol: SUNSPGMR when I try to create a solver with the name 'ida'. Also...
Hi, I am testing the ODES using Sundials 5.7.0 and Python 3.8. Everything seems to be fine, except for some DeprecationWarning running nose. Nevertheless I cannot converge the tutorial cases...
`numpy.distutils` is going to go away sometime in the near future (the timeline is unclear, likely due to it being driven by the CPython core devs). scipy seems to be...
Dear fellows, I have tried to install _scikits.odes_ on a Windows 10 OS with Anaconda 3, but I had some issues. **Packages Installed successfully:** SUNDIALS (`conda install -c conda-forge sundials`)...
This will need the secrets configured, but this should only act as a convenience anyway.
Fedora 31 x86_64, Python 3.7, openblas from fedora repo, scikits.odes ver. 2.6.1 Sundials 5.1.0 (as recomended) installed to `$HOME/opt/sundials/`: ``` cmake -DLAPACK_ENABLE=ON -DSUNDIALS_INDEX_SIZE=64 -DCMAKE_INSTALL_PREFIX=$HOME/opt/sundials/ ../sundials-5.1.0/ make install ``` For my...
I'm using `scikits` because it's listed on the [CVODE webpage](https://computing.llnl.gov/projects/sundials/uses-sundials). I'm building a biochemical simulator. Since populations of molecules must be non-negative, I'm following the advice in Hindmarsh, Serban and...
Following up with issue https://github.com/bmcage/odes/issues/107, when I am using the command from scikits.odes.sundials.cvode cimport CV_RhsFunction and cythonize, I get the following error Error compiling Cython file: ------------------------------------------------------------ ... print("Hello") import...
This is the PR mentioned in #99 (so shouldn't be merged until we work out how to fix #99).